PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23113_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 156aa    MW: 17538.2 Da    PI: 4.4044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23113_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.3e-06131153729
                  HHHHHHHHHHHHHHHHHHCTSCC CS
          HLH   7 erErrRRdriNsafeeLrellPk 29 
                  + Er+RR r+++++  Lr l+P+
  RrC23113_p1 131 ISERKRRGRMKDKLYALRALVPN 153
                  78********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.74E-6118155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-5123154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.15124156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-5126156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEGTVNVLSN LSDIELHNFL VDPNFDQFIN LIRGDDQSNK NPSLDFDLGG PFQNSPSFVD  60
ENHFIPTHVD DLFDELPDLD SNVAESFRSL DAESVKAGGD DDYNDCEDSS ATTTHTDGSR  120
KTRTDRSKTL ISERKRRGRM KDKLYALRAL VPNITK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2409850.0AC240985.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB008O16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622671.12e-99PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR-like
RefseqXP_013726731.12e-99PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
SwissprotQ0V7X48e-84FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A078H1792e-99A0A078H179_BRANA; BnaC03g46920D protein
TrEMBLA0A0D3B7A72e-99A0A0D3B7A7_BRAOL; Uncharacterized protein
STRINGBra000495.1-P7e-97(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41872857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.15e-85FER-like regulator of iron uptake